11/30/2022 0 Comments Genodive problems![]() ![]() Here the list of packages that assigner is depending on: if (!require("reshape2")) install.packages("reshape2") # Changing 'package_name' to the problematic package. If you know your way around the terminal and understand the consequences of using sudo rm -R command, here something faster to remove problematic packages: sudo rm -R /Library/Frameworks/R.framework/Resources/library/package_name GENODIVE PROBLEMS MACOn MAC computers, in the Finder, use the shortcut cmd+shift+g, or in the menu bar : GO -> Go to Folder, copy/paste the text below: /Library/Frameworks/R.framework/Resources/library ![]() Delete the problematic packages manually and reinstall. Warning: cannot remove prior installation of package ‘stringi’ Sometimes you'll get warnings while installing dependencies required for assigner or other R packages. Sudo cp ~/Downloads/gsi_sim/gsi_sim-Linux /usr/local/bin/gsi_sim Sudo cp ~/Downloads/gsi_sim/gsi_sim-Darwin /usr/local/bin/gsi_sim Read this short section of my tutorial on ( ).īinary, the gsi_sim executable, in the folder /usr/local/bin. If you have no idea what i'm saying here, you might want to first Is properly installed and available on the command line, so it is executable fromĪny directory. Option 2: Use a pre-compiled binary (Mac OSX & Windows) ( ) or quick copy/paste solution below: # Mac OSXĪssigner assumes that the command line version of ( ) Install.packages(pkgs = "~/Downloads/randomForestSRC", repos = NULL, type = "source") Option 1: From source (Linux & Mac OSX) # Terminal GENODIVE PROBLEMS INSTALLStep 3 For faster imputations, you need to install an OpenMP enabled randomForestSRC package website. Step 2 Install assigner: install_github("thierrygosselin/assigner") # to install Step 1 You will need the package devtools if (!require("devtools")) install.packages("devtools") # to install You can try out the dev version of assigner.
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